Levels: Primary, Middle, High, Other
| Name | Level |
|---|---|
| Alter Impact Ctr | High |
| Hays CO Juvenile Justice Alt Ed Prog | Not reported |
| Jhw Inspire Academy - Hays County | High |
| Katherine Anne Porter School | High |
| Ki Charter Academy | Other |
| Live Oak Academy | High |
| Pathfinder Camp | Middle |
| Texas Preparatory School | Elementary |
Levels: Primary, Middle, High, Other
Levels: Elementary School, Secondary School, Other - mixed grades
| Name | Level |
|---|---|
| Aesa Prep Academy | Mixed Grades |
| Hill Country Christian School of San Marcos | Mixed Grades |
| San Marcos Adventist Junior Academy | Mixed Grades |
| San Marcos Baptist Academy | Mixed Grades |
| Santa Cruz Catholic School | Elementary |
| St. Stephen's Episcopal School | Elementary |
| The Master's School | Elementary |
| Wonderland School | Elementary |
| Name | Level |
|---|---|
| Wimberley Montessori | Elementary |
Levels: Elementary School, Secondary School, Other - mixed grades
